PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0613s00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 200aa    MW: 22846.2 Da    PI: 8.7917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0613s00070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-073857120
                      EEETTTTEEESSHHHHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                      ++Cp C+k+F+r  nL+ H+
  Vang0613s00070.1 38 FPCPVCSKTFNRYNNLQMHM 57
                      89*****************9 PP

2zf-C2H214.40.00011122144123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C +C+k F  k + ++H +++
  Vang0613s00070.1 122 YMCRKCSKAFAVKGDWRTHEKNC 144
                       89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.73E-63460No hitNo description
Gene3DG3DSA:3.30.160.609.3E-73857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6163865IPR007087Zinc finger, C2H2
PfamPF139121.4E-53857IPR007087Zinc finger, C2H2
SMARTSM003550.0343860IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-6105142No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5118142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035559122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGEKEEVNII SEHPLDRLNK GQYWIPTPSQ ILIGPTQFPC PVCSKTFNRY NNLQMHMWGH  60
GSQYRKGPDS LKGTQPTAML RLPCFCCAAG CKHNIDHPRA RPLKDFRTLQ THYKRKHGIK  120
PYMCRKCSKA FAVKGDWRTH EKNCGKIWYC LCGSDFKHKR SLKDHIKAFG YGHGAFGIDC  180
LQEEDEAASE IEHDGEHSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0613s00070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493526.11e-152zinc finger protein WIP2-like
SwissprotQ9SVY11e-118ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3TIE31e-151A0A1S3TIE3_VIGRR; zinc finger protein WIP2-like
STRINGXP_007133835.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]