PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09360.1
Common NameLR48_Vigan04g223700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 175aa    MW: 19293.7 Da    PI: 7.3719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001287109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  Vang05g09360.1  87 FSCNYCQRKFYSSQALGGHQNAH 109
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-684115No hitNo description
Gene3DG3DSA:3.30.160.600.00185113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
METLSYQAPC DSLSVGVTPA SPSKPLQNPQ KKLEEEEEGE KEKKGDTLLD LNVPGDDSAT  60
GCSPVLNLIT CLEADLSSED PHEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERSIAKKRK  120
LTMESCRKTS RDKVDRLQLK SAGNEEISEY LVSGNTGLKT GQEKKKHLDL SLKL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g09360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421419.14e-69PREDICTED: zinc finger protein 1-like
SwissprotQ392614e-20ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A0L9UHM88e-68A0A0L9UHM8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RC828e-68A0A0S3RC82_PHAAN; Uncharacterized protein
STRINGXP_007136968.14e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-22zinc finger protein 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]