PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g04440.1
Common NameLR48_Vigan04g238400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 260aa    MW: 28766.2 Da    PI: 8.0679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g04440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-1082102526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++++ G Ck+Gd+C+FaHg
  Vang05g04440.1  82 ACPDYRK-GNCKRGDTCQFAHG 102
                     7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.3E-576106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.94377104IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-877103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-778104IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-881102IPR000571Zinc finger, CCCH-type
SMARTSM0035641112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTPNVQIPLW DSAAADGGPV SPFSPNAPDT ASFSTDHFRM FHFKVLTCPR GRAHDWTECP  60
YAHPAEKARR RDPRKFLYSA TACPDYRKGN CKRGDTCQFA HGVFECWLHP SRYRTHLCKD  120
GTNCRRRVCF FAHTNDQLRL TPDSSSLSSP TSVITSSFFD SPPSSPYVHN IQEIVSSMRN  180
VQLEDGLFSG LTRCVFGSTS GGILSGNGCE EEEPAMERVE SGRDIRARIY AKLSRENSIA  240
GSAPHVGWVS EPVNGFRGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g04440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420887.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO821992e-74C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
SwissprotO823079e-75C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A0L9UHL50.0A0A0L9UHL5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBT00.0A0A0S3RBT0_PHAAN; Uncharacterized protein
STRINGXP_007136803.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-73C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]