PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 225aa    MW: 24677.8 Da    PI: 4.2037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-181362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +kGVr++  +g+WvAeIr+p   + r +r +lg+f t ++Aa a++aa++kl+g
  Vang05g02530.1 13 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSQDAALAYDAAARKLYG 62
                    69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-191272No hitNo description
SMARTSM003805.0E-341376IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-211371IPR016177DNA-binding domain
PROSITE profilePS5103221.9971370IPR001471AP2/ERF domain
PRINTSPR003673.2E-91425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-301471IPR001471AP2/ERF domain
PfamPF008477.0E-131462IPR001471AP2/ERF domain
PRINTSPR003673.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRGKGGPENA SCTFKGVRQR TWGKWVAEIR EPNRGARLWL GTFETSQDAA LAYDAAARKL  60
YGPDAKLNLP DHPVPPVSHF PPPPPPVINT PTPDMENLQQ PLMQNNLDIP TCSNFNFNPA  120
VSMASHEVGL TPIYTSDCIV SLPLDTNPKP IATYTKPEGI EGEFSPSWET MTETLPVFDD  180
SIWAEAAMSL DLPLIAAENA IYTPENNNLA ADVDMWDPQT PWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-191470663ATERF1
3gcc_A3e-191470663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g02530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434420.11e-166PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A0S3RB601e-165A0A0S3RB60_PHAAN; Uncharacterized protein
STRINGXP_007136043.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-34ERF family protein