PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 325aa    MW: 35436.7 Da    PI: 10.5017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-06101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Vang05g02020.1 101 FVCEICNKGFQRDQNLQLHRRGH 123
                     89*******************88 PP

2zf-C2H213.10.00028177199123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H +t+
  Vang05g02020.1 177 WKCERCSKKYAVQSDWKAHTKTC 199
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.91E-7100123No hitNo description
Gene3DG3DSA:3.30.160.609.6E-6100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949101123IPR007087Zinc finger, C2H2
PfamPF121714.7E-5101123IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355230142172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4165198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.91E-7172197No hitNo description
SMARTSM00355220177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
LRRKGKPPLL FGKETNNSYK KGKVILRETL RGILQFILVN KTTMAEPQNP SPFTHSSASE  60
IAAQPQPLPP PKRKRNLPGM PDPDAEVIAL SPKTLLATNR FVCEICNKGF QRDQNLQLHR  120
RGHNLPWKLR QRGSKEPRKK AYVCPEPSCV HHNPTRALGD LTGIKKHFCR KHGEKKWKCE  180
RCSKKYAVQS DWKAHTKTCG SREYRCDCGT LFSSASLLRG LGLATTSPSS LGKDEVFNIS  240
ATTTAQWNGQ VKQENQPVVD NLGLGLPCGS DVMMGPSTPF VGQPMTRDLL GLSIGGGASR  300
GGLSALVTSF GGNFDSAGDG GVHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-21173213343Zinc finger protein JACKDAW
5b3h_F6e-21173213343Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127139KLRQRGSKEPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g02020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498477.11e-121protein indeterminate-domain 2
TrEMBLA0A1S3TXI11e-120A0A1S3TXI1_VIGRR; protein indeterminate-domain 2
STRINGGLYMA06G03630.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-89C2H2-like zinc finger protein