PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0552s00010.1
Common NameLR48_Vigan06g089700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 240aa    MW: 27096.7 Da    PI: 5.9519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0552s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000267799123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C k F ++  L  H++ H
  Vang0552s00010.1 77 FECQYCFKEFANSQALGGHQNAH 99
                      89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-673104No hitNo description
Gene3DG3DSA:3.30.160.601.4E-573103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40677104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEKDICDLSQ TWDGDNGNAT EKRLRLFGFE LNPSKESCVK ESGEGDESVN SSNSVSSGGD  60
KTVQEKTSAK DPDEKKFECQ YCFKEFANSQ ALGGHQNAHK KERMKKKRLQ LQSINRYLQH  120
PFQTSNGFAY QTSDSPWFYD PSTYNSEFTL CEEPQISFKS NVMDTNFSCD QKSSWYSVAS  180
HPPSQQDTCM FTFSNANNNS PFIYKPCHFP SSNQSHSNAL DLQLGLNLES NTTTSLRRM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0552s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427067.11e-180PREDICTED: zinc finger protein 5-like
TrEMBLA0A0L9US961e-178A0A0L9US96_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4061e-178A0A0S3T406_PHAAN; Uncharacterized protein
STRINGXP_007157512.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-15C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]