PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0548s00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 167aa    MW: 18965.7 Da    PI: 7.5518
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0548s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP507.7e-1640724678
                      TSSEEETTT--SS--S-STTTT-------S--- CS
               SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       srfh +sefD++krsCrrrLa+hnerrrk+++
  Vang0548s00060.1 40 TSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 72
                      69****************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.041170IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-54057IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.37E-124175IPR004333Transcription factor, SBP-box
PfamPF031106.9E-94169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEFGGNIFCL SNRDQNGNTN ANAFAWDSWQ TTTSNNNNTT SRFHVVSEFD DSKRSCRRRL  60
AGHNERRRKS SHDSVARNSS QGFEYIGGCA LSLLSSRSDS WLSPSDLSTR CSAALRELIA  120
ENRAAIMARQ FVSDRDWHIQ HHAVEDMKEI QPESNYFPQQ MFPQTQ*
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0548s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-143AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448322.14e-72squamosa promoter-binding-like protein 7
SwissprotQ01JD14e-25SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT423e-25SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A392Q4L59e-73A0A392Q4L5_9FABA; Squamosa promoter-binding-like protein 7-like (Fragment)
STRINGXP_004513942.11e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.18e-13squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]