PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g17720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 330aa    MW: 37723.8 Da    PI: 7.0311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g17720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073189213123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  ++++ H+++  H
  Vang04g17720.1 189 FYCDLCNKQYKLAMEFEAHLSSydH 213
                     78*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004436.2E-1992137IPR000467G-patch domain
PROSITE profilePS5017416.8794139IPR000467G-patch domain
PfamPF015852.5E-1695135IPR000467G-patch domain
SuperFamilySSF576675.7E-5172224No hitNo description
PfamPF121711.9E-5189216IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280191213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPHSPFDHEN FTIAGVPSST YPFLSSSKMD YRWTNGRLDT GGRDRRQSKR EQAYQDSLVE  60
DLSEDFRLPI NHRPTENVDL DNVEQASLDT HLTSSNIGFK LLQKMGWKGK GLGKDEQGIT  120
EPIKSGIRDP RLGVGKQEED DFFTAEENIQ RKKLDVELEE TEEHVKKREV LAEREQKIQT  180
EVKEIRKVFY CDLCNKQYKL AMEFEAHLSS YDHNHRKRFK QMKEMHGGGS RDDRQKREQQ  240
RQEKEMANAD AQKQQRLQLQ QDSGSGTVSS ESRTATALTD QEQRNTLKFG FSSKGSGSKI  300
TFGAKKQNVA KKQSAPPISS IFSNDSDEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g17720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963740.0BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419572.10.0PREDICTED: G patch domain-containing protein 8
RefseqXP_017419573.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A0S3S0310.0A0A0S3S031_PHAAN; Uncharacterized protein
STRINGXP_007163288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428