PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g16700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 244aa    MW: 27644.4 Da    PI: 10.8749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g16700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-063860123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+++F ++  L  H++ H
  Vang04g16700.1 38 FRCHYCNRVFANSQALGGHQNAH 60
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.97E-63565No hitNo description
Gene3DG3DSA:3.30.160.601.7E-43564IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8223865IPR007087Zinc finger, C2H2
PfamPF139121.9E-53862IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF120232.0E-25198242IPR021899Protein of unknown function DUF3511
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSDNHKTQSS APKLFGFPLT EQEEFAERKY DDGEDRKFRC HYCNRVFANS QALGGHQNAH  60
KKERQRARRF QIHNHRRSSM PPPSSSLSVT PLTFLTSHAI IRSLPLSIPR ANTKVTFQRS  120
EHCSFLATAH VSVLHCLSSQ YTLSRNFQTL TKALFPPLDM ESYGSGHRRM EVVSGKSHGW  180
SGSRSPDSAQ GSEKPWRFSD PEAKRKKRVA KYKVYGVEGK VKATVKKGLR WIKNKCSQIA  240
HGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g16700.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0L9U9815e-96A0A0L9U981_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-16C2H2 family protein