PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g16100.1
Common NameLR48_Vigan03g287100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 475aa    MW: 51924.6 Da    PI: 8.0576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g16100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-053456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Vang04g16100.1 34 FVCEICNKGFQRDQNLQLHRRGH 56
                    89*******************88 PP

2zf-C2H216.32.7e-05110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H++t+
  Vang04g16100.1 110 WKCDKCSKRYAVQSDWKAHQKTC 132
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-53356IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-83356No hitNo description
SMARTSM003550.0173456IPR015880Zinc finger, C2H2-like
PfamPF121717.5E-53456IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9493456IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
SMARTSM003556775105IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-698131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-8105131No hitNo description
SMARTSM0035589110130IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVSCYLLMDM FYEIDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  60
KLRQRTSTEV KKRVYVCPEP SCVHHNPGRA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA  120
VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL  180
QNQIPDLMST MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP  240
KSMSPSSSSL QLGSNTSSSF NYLQDNKNGG LIAASAQMSA TALLQKAAQM GATASNTINS  300
PMMQKGFVSS TAAPDHVSST RPPYSGAMLQ HNNSYDHFSP QPDLSNMAGV SGGGAFINQL  360
FHKGQEISQV FDTNTAGSAM NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SGLIHGKDVV  420
EGNPMQPSRF GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAAMEEP IWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35106169366Zinc finger protein JACKDAW
5b3h_F1e-35106169366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g16100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418855.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0L9UAE70.0A0A0L9UAE7_PHAAN; Uncharacterized protein
STRINGXP_007163083.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]