PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 254aa    MW: 28419.6 Da    PI: 10.3675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Vang04g14470.1 44 FECKTCNRKFSSFQALGGHRASH 66
                    89**********99999998887 PP

2zf-C2H213.80.0001792114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  Vang04g14470.1  92 HECSICGQEFSLGQALGGHMRKH 114
                     78********************9 PP

3zf-C2H213.80.00017205227123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  Vang04g14470.1 205 HECTICGQEFSLGQALGGHMRRH 227
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6994471IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-844114No hitNo description
SMARTSM003550.194466IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-104468IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-490116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.49292119IPR007087Zinc finger, C2H2
SMARTSM003550.06792114IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-992116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-5154182No hitNo description
PROSITE profilePS5015710.097156183IPR007087Zinc finger, C2H2
SMARTSM003550.43156178IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-10156180IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-6202228No hitNo description
PROSITE profilePS501579.785205227IPR007087Zinc finger, C2H2
SMARTSM003550.085205227IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-9205229IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVAMKRQRGN EGSENLDLAK CLMLFSCPEE SNKAQEKGFG SLEFECKTCN RKFSSFQALG  60
GHRASHKRQK VEGEELKEQG KSLSLWSKPK MHECSICGQE FSLGQALGGH MRKHRGISNE  120
GFVPIPSIDQ VIAKFPVLKR SNSTRLQRKH VEDVEFECKT CKRKFSSFQA LGGHRASHKR  180
SKLEGDELKA QPIGLSLGIR KPKMHECTIC GQEFSLGQAL GGHMRRHRAS INGDFSSVKH  240
VAEVPVLKRS NSTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417818.11e-101PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0L9U7Y71e-100A0A0L9U7Y7_PHAAN; Uncharacterized protein
STRINGXP_007162678.14e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-31C2H2 family protein