PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12030.1
Common NameLR48_Vigan03g158900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 218aa    MW: 23827.7 Da    PI: 7.9714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C +sFs+   L  H+r+H
  Vang04g12030.1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                    79********************9 PP

2zf-C2H213.90.0001690112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  C+k+F++   L  H  +H
  Vang04g12030.1  90 YKCDTCNKVFRSYQALGGHRASH 112
                     9***********99999998887 PP

3zf-C2H211.50.00095144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++F +   L  H rtH
  Vang04g12030.1 144 HECPVCFRVFASGQALGGHKRTH 166
                     79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-6427IPR007087Zinc finger, C2H2
SuperFamilySSF576675.11E-9426No hitNo description
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.11E-985112No hitNo description
PfamPF139122.0E-1390114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.36790117IPR007087Zinc finger, C2H2
SMARTSM003550.01490112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.86E-5140168No hitNo description
Gene3DG3DSA:3.30.160.600.001142169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.3E-11144166IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307144171IPR007087Zinc finger, C2H2
SMARTSM003550.22144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDKHKCKLCF RSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAE SASSSSSSSD  60
DDEDGDKCLC YGLRENPKRS IRLVDPEFSY KCDTCNKVFR SYQALGGHRA SHKKIKVNVK  120
VDGEEAEVEH RKKSGTCGVE KKIHECPVCF RVFASGQALG GHKRTHVTGS APSTVPSTSA  180
KFGNSFIDLN LPAPIDEDEA SQIENSAVSD AEFVKTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417590.11e-86PREDICTED: zinc finger protein ZAT9
TrEMBLA0A0L9U6B42e-85A0A0L9U6B4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RW082e-85A0A0S3RW08_PHAAN; Uncharacterized protein
STRINGXP_007140808.13e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-34C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]