PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g07910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 230aa    MW: 24299.5 Da    PI: 8.6835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g07910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.5e-39161161100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf aeq +++fa vhk+FGasn++kll ++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqqq+ +l+ael
  Vang04g07910.1  16 PCGACKFLRRKCIQGCIFAPYFDAEQgTAHFASVHKVFGASNMSKLLLSIPVHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVSLQAEL 110
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+ +
  Vang04g07910.1 111 SYLQGH 116
                     *99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.60215117IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-3816114IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNTGNSSNGN NSSGSPCGAC KFLRRKCIQG CIFAPYFDAE QGTAHFASVH KVFGASNMSK  60
LLLSIPVHKR LDAVITICYE AQSRLRDPVY GCVSHIFALQ QQVVSLQAEL SYLQGHLAQM  120
EGPHPPPPPP SQSATALRFS MADLPSAATG AVAPATTYDL SSLFDTSGQI TWAMQQRALD  180
PRQYVAAPPS SSTRANVEAV ARDLARRHGS PPSPPASSCN ASPSLSLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490267.11e-132PREDICTED: LOB domain-containing protein 18-like
SwissprotO221315e-71LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0S3RTE11e-169A0A0S3RTE1_PHAAN; Uncharacterized protein
STRINGGLYMA18G45320.12e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-68LOB domain-containing protein 18