PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g01650.1
Common NameLR48_Vigan07g094300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 178aa    MW: 19490.2 Da    PI: 9.0332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g01650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00153961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  Vang04g01650.1 39 FECKTCNRQFPSFQALGGHRASH 61
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-837109No hitNo description
PfamPF139122.9E-133863IPR007087Zinc finger, C2H2
SMARTSM003550.163961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139126.3E-1086111IPR007087Zinc finger, C2H2
SMARTSM003550.587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.91287109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKREREVDSL TMANCLMLLS RGGEFEATYS SSSMSNRVFE CKTCNRQFPS FQALGGHRAS  60
HKKPRLMPGD NSEGQLLHDS PPKPKTHECS ICGLEFAIGQ ALGGHMRRHR AVNLNGNLHN  120
STTVSSSSGG SSSMDSSTKN KVPHKRVLVL DLNLTPFEND LEILKIGKPT ALVDYLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g01650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429808.11e-130PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0L9UXF71e-128A0A0L9UXF7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RRM41e-128A0A0S3RRM4_PHAAN; Uncharacterized protein
STRINGGLYMA18G52410.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-34C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]