PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g01000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 358aa    MW: 39237.6 Da    PI: 8.7416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g01000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.63e-3161164199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+
  Vang04g01000.1  61 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA 155
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e +l ++
  Vang04g01000.1 156 AVENVLKGA 164
                     *99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.88960166IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-2561159IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
LKNPLFLSLS FSLLNPPTNI YPRFAQFYDH NLIFLSYRKK KTLQILLSPR FSIGSSKMRM  60
SCNGCRVLRK GCSENCSIRP CLQWIKSPES QANATVFLAK FYGRAGLMNL VNAGPEHLRP  120
AIFRSLLYEA CGRIVNPIYG SVGLLWSGSW QLCQAAVENV LKGAPITPIT SEAAASGRGP  180
PLKAYDIRHV SRDENSAASN ETQQQRVKTR CRVRRPVANA KPKSTTNENN GDKGTELGSS  240
EPGLVTCEWT EEAVNRSGSH ESSLSHQSEA ANAVESESMV SVETAETSIL FRDEPDSNPK  300
IVQRTDDVGL ELTLGFEPVS RAQHVVPVKK RRIELKDFSG SAESGSCKME LGLECSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g01000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408949.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0L9TDB60.0A0A0L9TDB6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQV60.0A0A0S3RQV6_PHAAN; Uncharacterized protein
STRINGXP_007139150.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LOB domain-containing protein 41