PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0441s00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 316aa    MW: 36462.8 Da    PI: 8.4838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0441s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000261437223
                      EETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                      kC  C + F+  ++L+ H+r   H
  Vang0441s00120.1 14 KCAACFRQFNKLEHLVEHMRIsyH 37
                      6999****************8666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.31337IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8871342IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
SMARTSM003551304262IPR015880Zinc finger, C2H2-like
SMARTSM003553177101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF530981.1E-10144262IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.2E-17155267IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDCRIESTET HRNKCAACFR QFNKLEHLVE HMRISYHSVH EPTCGICRKH CRSFESLREH  60
LIGPLPKQEC RDIFAYRGCK FCLKVFDSPN SRRIHQEKCQ HSGTNAGIIG RFSNLGLRDN  120
LAISGGARGP QVVALACKMV GGGSDGSLDL CGRVPEYLRD AMPMRQVQRR IQDFLCNGEP  180
MWTIRARGGR ARILVGHGLD HDLECLQIEY RTEKIRDTAK YPPLMKTSKL SNSLKYDIQV  240
GIQDPYDDCV ATMRLYMRMR SQLHRTQDYP LVSDPQNRNN FASWRQSELE RMTPEQMLEI  300
SRSDYYCWCF DSLYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0441s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-133AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497587.10.0apoptosis-enhancing nuclease-like
TrEMBLA0A0S3RW520.0A0A0S3RW52_PHAAN; Uncharacterized protein
STRINGXP_007140956.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF257434