PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g18180.1
Common NameLR48_Vigan10g069900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 404aa    MW: 44863.5 Da    PI: 8.6912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g18180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042312334123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC  CgksF++   L  H ++H
  Vang03g18180.1 312 YKCAACGKSFKTFQGLGGHRSVH 334
                     9***********99998888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355215072IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-65172IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576679.25E-6310338No hitNo description
SMARTSM003550.27312334IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572312339IPR007087Zinc finger, C2H2
PfamPF139121.6E-6312336IPR007087Zinc finger, C2H2
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDRRDNGKQA VSDHVLDSCT KEKMKRSVLG SCKAEVESVA DEENPSPKLS QCDICLKIFG  60
CGKALGGHRR SHFMKQQQQK KVKTRFTDNH TSKPSGDNNI RVICDFDDDD GKHICCICKK  120
EFPTKNAFWL CKGTRGRSSI GAYQAAETLF YMSCSKYFSS HERNRVFPKK DEVPPKSAPT  180
LIKQCKRKTF ESSPSKKDKV KKIKFLFKGE LNLGSTSNGV GECDGEGNRL NRCKGLSESG  240
VEHNHDEKKM KSFDDLNGES VTPTMQDHVG PSDVKKINMD KKGKNGKKLV LNSRTKDSES  300
EKAASQEKAD WYKCAACGKS FKTFQGLGGH RSVHKEKNTV SIDEPNPSEA VAEQNNSSSS  360
SNMNKMEDPL FNETTLADQP CQSSGVKKLN FDLNELPCAN DED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g18180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438062.10.0PREDICTED: uncharacterized protein LOC108344105
TrEMBLA0A1S3W2T00.0A0A1S3W2T0_VIGRR; uncharacterized protein LOC106780682
STRINGXP_007146189.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-07C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]