PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 550aa    MW: 60029.5 Da    PI: 9.3822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05138160123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Vang03g11710.1 138 FVCEICNKGFQRDQNLQLHRRGH 160
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5137160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-6137160No hitNo description
PROSITE profilePS5015710.949138160IPR007087Zinc finger, C2H2
SMARTSM003550.017138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM0035596179209IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-4202235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-6209234No hitNo description
SMARTSM00355150214234IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
EFRGFCPYTF TSSNPIFFLR FSSHFPFART RVKRSTTLGR KRRGSMSNSN ITSCDSWSFS  60
TENTGEDAAA AVKHQQLEML PQNHSPNSNT STTTNNSNAS NTNSQPPLKK KRNLPGNPDP  120
NAEVVALSPN TLVATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKLRT TTEVKKRVYV  180
CPEPSCVHHN PARALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVHSDWK AHSKICGTKE  240
YKCDCGTIFS RRDSFITHRA FCDALSDDSN KFNEAGQLQS IMHASNLQPP MIPNLAASLP  300
INTNNHKQPL PLPHDLIAAI PAKPFSSNMA ALPRSLSSTS SLSQLCSNSP HINMFEEKPQ  360
TNMSATALLQ KAAQMGATVN SNSNGMMTET GFATSMAPPS YGVMNHHIHH GQQDLSQYNF  420
HANGTVMMDG VGNGMGGMSG LDMFNAILDQ SKALSKIIEQ NNRSSYSGVL HAMNNGRSSS  480
IDVGGAKGSE DVMTLDLLGI GGGVGGGGGG DGSFFGGEQS ELKIEYGEMS QIRIQALNHF  540
QQQTAAYEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-32210268361Zinc finger protein JACKDAW
5b3h_F7e-32210268361Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g11710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435192.10.0PREDICTED: protein indeterminate-domain 2
TrEMBLA0A0L9VDV70.0A0A0L9VDV7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S5H60.0A0A0S3S5H6_PHAAN; Uncharacterized protein
STRINGXP_007147037.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-96C2H2 family protein