PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g08250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 233aa    MW: 26800.2 Da    PI: 5.1447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g08250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.57.7e-38511701128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeel+v++L++k++  +++  +vi+++++y+++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++v+s+
  Vang03g08250.1  51 LPPGFRFYPTDEELIVHFLHRKASLLPCHP-DVIPDLELYQYDPWELHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSS 136
                     79*************************999.99**************977778899******984........58*****************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kk +vf+ g++ ++ kt+W+m+eyrl
  Vang03g08250.1 137 sNSKRVGMKKYFVFHVGEDATAIKTNWIMQEYRL 170
                     78889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4946200IPR003441NAC domain
PROSITE profilePS5100546.31551201IPR003441NAC domain
PfamPF023657.7E-2352170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTSLPVSTD ASERRMYLDP AIYSLSIRYF LATFIFPLPL LASMADTNVN LPPGFRFYPT  60
DEELIVHFLH RKASLLPCHP DVIPDLELYQ YDPWELHGRA LAEGNQWYYY SRRTQNRVTG  120
NGYWKPTGME EPVVSSSNSK RVGMKKYFVF HVGEDATAIK TNWIMQEYRL SDSASSTRSS  180
KRKPQPKSDY NKWVICRVYE RNGEEDNGTE LSCLDEVFLS LDDDLDEISL PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-404720213166NO APICAL MERISTEM PROTEIN
1ut4_B1e-404720213166NO APICAL MERISTEM PROTEIN
1ut7_A1e-404720213166NO APICAL MERISTEM PROTEIN
1ut7_B1e-404720213166NO APICAL MERISTEM PROTEIN
3swm_A1e-404720216169NAC domain-containing protein 19
3swm_B1e-404720216169NAC domain-containing protein 19
3swm_C1e-404720216169NAC domain-containing protein 19
3swm_D1e-404720216169NAC domain-containing protein 19
3swp_A1e-404720216169NAC domain-containing protein 19
3swp_B1e-404720216169NAC domain-containing protein 19
3swp_C1e-404720216169NAC domain-containing protein 19
3swp_D1e-404720216169NAC domain-containing protein 19
4dul_A1e-404720213166NAC domain-containing protein 19
4dul_B1e-404720213166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g08250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-151AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518079.11e-142NAC domain-containing protein 104
RefseqXP_017435791.11e-142PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK64e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0L9VH661e-140A0A0L9VH66_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1Y91e-140A0A0S3S1Y9_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VJ011e-140A0A1S3VJ01_VIGRR; NAC domain-containing protein 104
STRINGXP_007148437.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-78xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]