PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 428aa    MW: 48671.7 Da    PI: 8.5522
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.3e-26151200255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH++Fv++ve+LG    AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Vang03g06890.1 151 PRLRWTPELHHSFVHVVERLG----ATPKLVLQLMNVQGLSIAHVKSHLQMYRS 200
                     8*******************5....9***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.343147203IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-26147201IPR009057Homeodomain-like
SuperFamilySSF466891.45E-12149201IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-18151202IPR006447Myb domain, plants
PfamPF002491.5E-9152199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
LEMTDFKICL DMHHLLLRLG RERHRLLRCS SCPPLAADLK FQLCKEREKS IGWTQKPVQQ  60
QVNMSEGHEI HNNEESSSGC SQKCSSFDLN AEACSDDNTN GNTEDGYELT TNENNVEKVN  120
DEGTSGNGSS ISREGNARRG TVRQYVRSKM PRLRWTPELH HSFVHVVERL GATPKLVLQL  180
MNVQGLSIAH VKSHLQMYRS KKLDEAGQVL SQTYKWNQNQ KLRRSVILHE SMNPQQHLKM  240
GNGGIILATQ FNNCHFPSLV DTPFPLSPSH TNDTDSRQQQ WYINHQTFRK SIASGHIQAK  300
DTTTRPSKLL EEKSWLPLEI ISNHQSKFQK LPATVAPKNY GSQAVQLAEW SFVNKTSVTE  360
YLSNKSNEPR NYSNSLKLQF DPPFRIKKDE QELPNLQLGL SYTIASDGDK MDHYKETQEI  420
STKLSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-14152202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14152202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14152202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14152202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14152202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435859.10.0PREDICTED: uncharacterized protein LOC108342580
RefseqXP_017435860.10.0PREDICTED: uncharacterized protein LOC108342580
TrEMBLA0A0L9VF430.0A0A0L9VF43_PHAAN; Uncharacterized protein
STRINGXP_007148039.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-29G2-like family protein