PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 394aa    MW: 43277.4 Da    PI: 10.1966
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.71.3e-31144243198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     k+fqrlwseeDe+++L+Gl +f++ktg +p +    +af++f+kks++++v+++ql eK rrLKkK++    + +s +   f+k+hdqk+felsk
  Vang03g04890.1 144 KKFQRLWSEEDELAILKGLAEFTSKTGNDPLKfaGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVRENSADGLIFAKPHDQKTFELSK 238
                     68**************************88765599*************************************9********************* PP

          DUF573  94 kiWgs 98 
                     k+Wgs
  Vang03g04890.1 239 KVWGS 243
                     ***95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-30146242IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDRPPCSSFN SAAKARPPNY SPSRASPSKA DVTGGLSPMS LVALRSLNFY SLWGLEISTK  60
NRCFALVKVD FPLVDTAIGK CFNSGLWPKV LPSPAPPKPA VKRPADNSNA HVAKKKKKSG  120
DSSSSPAASD EEMEEGKKSG DQMKKFQRLW SEEDELAILK GLAEFTSKTG NDPLKFAGGN  180
AFHDFLKKSL HVEVTSNQLK EKARRLKKKY EIAAVRENSA DGLIFAKPHD QKTFELSKKV  240
WGSEQDGGVA NGAVEKPKAN GNAAKSPKKK ETGSRNVASA KKTKPEPKQE TVPATRMEFK  300
ESEKMHIDQK TVNCEVSMFL HALSHFKEGL GVCGLDEEDV KKGLELIGES KRTELRAKWK  360
KLQRTELELF ANRSELIGEQ TKLIVEALRS SNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436582.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0L9VGR10.0A0A0L9VGR1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S2B40.0A0A0S3S2B4_PHAAN; Uncharacterized protein
STRINGXP_007148295.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-27DNA-binding storekeeper protein-related transcriptional regulator