PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 626aa    MW: 70015.5 Da    PI: 4.7108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013196219123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C +C++sF  k+++ +H+ + H
  Vang03g04220.1 196 FECRKCNMSFDEKDSYLQHLLSvH 219
                     89******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.78E-5195265No hitNo description
SMARTSM003550.017196219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411196224IPR007087Zinc finger, C2H2
PROSITE patternPS000280198219IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642243270IPR007087Zinc finger, C2H2
SMARTSM003550.37243265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MNNASVLATS QDPFADELKR RTEGLSSEEE LLGFLRDLPG QWGSRRKKRR IVDASDFGDV  60
LPLSWKILLG LKRKDGRAWI YCRRYIRAYP IFDIPPCSPS GQQFVSCKEV SSYLQSLLGN  120
GDGQSQSSRR SENVVQEQIV PAENSAGVTP ERQDQRQIVA VNAEVPGLFA GARERVKEVA  180
LLGIENLADV QIQDLFECRK CNMSFDEKDS YLQHLLSVHQ RTTRRYRLGS SVGDGVIIKD  240
GKFECQFCHK VFLERRRYNG HVGIHVRNYV RRVEDSPGQI NVQRTDDKSP VREDVPLRIS  300
KMDALIEIAQ NSIMEGCVTE PHHLAKLNGI PASDVAVGYL DQDGNSEAPI SEKQMEDSLT  360
KKNVDHHGMD GKVEEVDNDN RVIDVKMVTF LDNMGLLSVN KQDVKASETS EVKDDVELTI  420
EELDQSGIDL DGVSEVHLSE LNMIPESEKG ENSESSNAKV QFKPDEGISN KSDLEFGLNC  480
LKDVPVTVST DVQEMVMAGS EENVVHSRAF NSSISTEQPM DCLPAFSSDK GGKQFCRLEN  540
EHDNVKGLEE LRFDEIDSVD YDFARIQDSP SPPAVSAELA NDAVMGETFL SSVQFESQLT  600
TLVKQKSLVK STCWTVNRQM LAVYRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434853.10.0PREDICTED: uncharacterized protein LOC108341719
TrEMBLA0A0S3S2320.0A0A0S3S232_PHAAN; Uncharacterized protein
STRINGXP_007148405.10.0(Phaseolus vulgaris)