PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g02070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 569aa    MW: 59987.3 Da    PI: 8.5735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g02070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.6e-114974227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C +G+rC+++H++
  Vang03g02070.1 49 DEADCTYYLRTGFCGFGSRCRYNHPR 74
                    6799********************96 PP

2zf-CCCH35.12.2e-1195119327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rt tCk+G++Ck++H++
  Vang03g02070.1  95 QPVCQYYMRTRTCKFGSSCKYHHPR 119
                     689********************96 PP

3zf-CCCH361.1e-11140164226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++ +tG+Ck+G++CkF+H+
  Vang03g02070.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164
                     7899********************9 PP

4zf-CCCH29.61.2e-09438461427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ++a+ G Ck+G+ CkF H++
  Vang03g02070.1 438 SPCTHYAQHGVCKFGSACKFYHSM 461
                     69********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5964775IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-44774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-64975IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-45374IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-492119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.45592120IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-995119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-595118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-497117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718138166IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6140165IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4144163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033434461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981435462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6437464IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7438460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5439461IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEQYGRSSEG SRSDPSPEWA GPGAQTGLEE PMWQLGLGAA EESYPQRPDE ADCTYYLRTG  60
FCGFGSRCRY NHPRDRGTFV GAERTAGEYP ERVGQPVCQY YMRTRTCKFG SSCKYHHPRL  120
AGGSATPVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPVPAGVQ IPAPSPVAPV  180
SPLPVPVPSP LYSTMQPPPG PSSQQIGVLV ARPPLLPGSL VQSPYGPVVL SPAMVPISGW  240
GPYQASGTGA VLPSGTPNVG SAQLYGMTQL PSSAAAYPGP YQLPGSLVGP SSSNQKEQAF  300
PERSNQPDYQ YYPKTGEVKV GPSYRYHPPP EMTAPKANVT LSPGGLPLRP GLQARVGNKN  360
ADPKLGMLFE IVNSPAYNLS QYSEISIPHR GEGGARVGKF VNGCIGTKTE VCGRIKLGIN  420
QPLSPYIFSS SQHHQGASPC THYAQHGVCK FGSACKFYHS MGSLSYSPSA SSLADMPVAP  480
YPVGSTIGTL APSSSSSELR LELSSGSNKE SVPSRMSSSS GMLTGSIGLT LSTGEPISQS  540
NSQPSAPSLD PLATATSTTT SNVSHTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g02070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643038.10.0zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ6NPN31e-122C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A3Q0FH240.0A0A3Q0FH24_VIGRR; zinc finger CCCH domain-containing protein 34 isoform X1
STRINGXP_007147888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-114C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]