PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 367aa    MW: 42848.4 Da    PI: 9.634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.8e-1073100126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++G  tC++G  C+F+H+
  Vang03g00910.1  73 WKVAICGEYMKSGfkTCSRGTACNFIHC 100
                     899************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549284.15E-62170IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.6E-72468IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.0E-112749IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.0E-115478IPR009145U2 auxiliary factor small subunit
SMARTSM003568.5E-572101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.87872102IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-773100IPR000571Zinc finger, CCCH-type
PRINTSPR018482.0E-1192104IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMVALVIWLS AIGGLINLAK KDMVCKNGSF HLRGNVYVQY KALDSALLAA NLINRHDFTG  60
KRVTCQFVNL TRWKVAICGE YMKSGFKTCS RGTACNFIHC FRNPGGDYEW ADSDKPPPKF  120
WVEKMIALFG YSDDYETSRE QGNFSLSKTD SDRYHCRRSR SRETDRLSCG HSGRRKHEDE  180
RKQRTPYEDR NASLKNTHKR KSRGTTDTDS DREWLEKEEI RERRHEYTRN GSFNKRRDEN  240
SRSHEEDSDM DCDTRDNEKQ HGRNPRKCDN DIRVWINEAA GLDGDRDVRK HRIRESSGHQ  300
SGDASESNKD LFGRVEMETL HDHFRKTYSH RRSGVQVSVK GRDQNDKVDR DGSRKDSYKR  360
DHHKRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g00910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436310.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1
RefseqXP_017436311.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X2
RefseqXP_017436312.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X3
TrEMBLA0A0S3S1J10.0A0A0S3S1J1_PHAAN; Uncharacterized protein
STRINGXP_007148590.11e-171(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.19e-61C3H family protein