PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 184aa    MW: 19830.3 Da    PI: 4.9216
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.82.9e-28111024114
             TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............................. 88 
                     ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++                             
  Vang03g00740.1   1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSFRSSGSTLSAPpsnylrkryredlfkddninsqsqnesgd 95 
                     9*****************************************99999888766666666665555566667777777666666654322222222 PP

             TCP  89 kaaksaakskksqksaasalnlakes 114
                               +s+k ++  l+l k++
  Vang03g00740.1  96 G---------SSPKTPN--LQLPKQQ 110
                     1.........2222222..3333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.372139IPR017887Transcription factor TCP subgroup
PfamPF036349.9E-28199IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNVSFRSSG  60
STLSAPPSNY LRKRYREDLF KDDNINSQSQ NESGDGSSPK TPNLQLPKQQ PQQQNEAGSG  120
LLRPTNLLPA TAMFNLPSAL EFQGARAGSL QLGSMLMPQQ PSQHLGLAIL EVELNEFVIS  180
ECF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g00740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-111AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485466.16e-51transcription factor TCP8
SwissprotQ9LQF01e-36TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A3Q8TD567e-53A0A3Q8TD56_DIOKA; Transcription factor TCP1
STRINGXP_004485466.12e-50(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-39TCP family protein