PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0397s00110.1
Common NameLR48_Vigan833s001000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 445aa    MW: 49606.8 Da    PI: 9.5554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0397s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00152345123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C+k+F+   +L  HirtH
  Vang0397s00110.1 23 YVCKYCSKRFPCGKSLGGHIRTH 45
                      9**********999999999998 PP

2zf-C2H214.50.00011117137323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk F++   L  H+ +H
  Vang0397s00110.1 117 CKECGKGFPSLKALCGHMASH 137
                       ******************999 PP

3zf-C2H210.90.0014389411123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C k F++   L  H r+H
  Vang0397s00110.1 389 HECPICYKIFRSGQALGGHKRSH 411
                       79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-51948IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-102145No hitNo description
PfamPF139126.2E-72347IPR007087Zinc finger, C2H2
SMARTSM003550.0782345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1152350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SuperFamilySSF576677.57E-10110137No hitNo description
SMARTSM003550.063115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034115142IPR007087Zinc finger, C2H2
PfamPF139121.7E-7117139IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139124.6E-11389411IPR007087Zinc finger, C2H2
SMARTSM003550.28389411IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141389411IPR007087Zinc finger, C2H2
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQFEEVMRKT RFTSRQSMEE RKYVCKYCSK RFPCGKSLGG HIRTHMTEER SNADADIFIK  60
SDGVKKKRDL WCEDVVGNPI YGLRENPKKT MRFVHSGARR GCGSGVAGAN NEKEKFCKEC  120
GKGFPSLKAL CGHMASHSDK EKRTIKCLMM LSRDSSFKGR FASVTECSDN NSVVLEAKSS  180
SPDIRIGVSN GNYNFVSNNA YDLVDNKLLR VNDIKLKSVE FGASDNSGSR YFKHGPKTKM  240
VDSDVSNDQF KWPKVGDKSS KYTATLVKKS VMEELDYDGT DGTARKFDSR KRSNYDSLDN  300
NPVGGSSKKI ANGFGNEVYG NSTKGWKYES LEGERDYDSF DYSIEESHEN SSETESYPAP  360
RSHNSKALNG KKSTSKAKKK LKSKKSRDHE CPICYKIFRS GQALGGHKRS HFIGGSEENT  420
LVIKQAAPVV PCLIDLNLPA PVDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0397s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410835.10.0PREDICTED: uncharacterized protein LOC108323021 isoform X1
TrEMBLA0A0L9THI20.0A0A0L9THI2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R2G40.0A0A0S3R2G4_PHAAN; Uncharacterized protein
STRINGXP_007158625.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-56C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]