PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0387s00100.1
Common NameLR48_Vigan03g192300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 207aa    MW: 23302 Da    PI: 10.021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0387s00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-053254123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k Fs++  L  H++ H
  Vang0387s00100.1 32 FSCNFCKKEFSSSQALGGHQNAH 54
                      89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-72959No hitNo description
Gene3DG3DSA:3.30.160.604.5E-53058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-53256IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7593259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDTGNSSSSR ENYIKKRDEH NNEVKSSKTK TFSCNFCKKE FSSSQALGGH QNAHKQERAL  60
AKGNQRIEVG AFGHLHFLYY PYLTNSFYGS YSRTLGVRME SMIHKTSYRL SSLGFRFDHH  120
SSLHGLRKKG LNEIMNMESD ATVRKQGDNL IIRQNTHFLS KSSAEVEIKS NPAMSPLNIV  180
HFDSQSKQEG TSNPNSSYGI DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0387s00100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416696.11e-151PREDICTED: zinc finger protein 3-like
TrEMBLA0A0L9U7091e-150A0A0L9U709_PHAAN; Uncharacterized protein
STRINGGLYMA04G15560.22e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-21C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]