PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0376s00120.1
Common NameLR48_Vigan08g125800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 186aa    MW: 20140.7 Da    PI: 8.6111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0376s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-1863113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta  Aa a+++a+k+++g
  Vang0376s00120.1  63 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSTAISAALAYDEAAKAMYG 113
                       56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1363113IPR001471AP2/ERF domain
CDDcd000181.64E-3063123No hitNo description
SuperFamilySSF541717.19E-2164121IPR016177DNA-binding domain
PROSITE profilePS5103221.4364121IPR001471AP2/ERF domain
SMARTSM003807.5E-3764127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3164122IPR001471AP2/ERF domain
PRINTSPR003679.6E-106576IPR001471AP2/ERF domain
PRINTSPR003679.6E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLVKDHNRGD GSKSLAYTLA RWKEYNAWLE SSNEAEKAVR KVPAKGSKKG CMKGKGGPEN  60
TLCNYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFSTAISA ALAYDEAAKA MYGSVARLNF  120
PNLEVSALSE ESSRNSPAGS QCGSALVISE SSECMIFPNS SEGDKAKDDD MEGLSLSLSV  180
KHEVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1964121563ATERF1
3gcc_A4e-1964121563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0376s00120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432522.11e-134PREDICTED: putative dehydration-responsive element-binding protein 2H
RefseqXP_017432523.11e-134PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR26e-49DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0L9V5V81e-133A0A0L9V5V8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBR21e-133A0A0S3SBR2_PHAAN; Uncharacterized protein
STRINGXP_007132590.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-45DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]