PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0337s00140.1
Common NameLR48_Vigan10g193400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 276aa    MW: 30000.4 Da    PI: 8.0472
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0337s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-3141081100
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+
  Vang0337s00140.1   4 SCNGCRVLRKGCSEDCTIRPCLewiknPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallkee 100
                       q+++e++l +e+
  Vang0337s00140.1  97 QAAVEAVLKGEP 108
                       *****9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9363109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCT IRPCLEWIKN PESQANATVF LAKFYGRAGL MNLINAGPQN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEVAANG  120
RAPPLKACDI RHVSKDENTA NRTQKAKTRI RVKRTCGDVL IKPKAPTVTG FVPVEAETNQ  180
TTSHESGLSH LSEAAAIVEG ESKESESVVS VETCNLFGET KTSDRFGATN DEIGLELRLG  240
LEPVSREHHM VPMKKRRIEV KSSCDLMELG LESSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0337s00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438888.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-104LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0L9VMD90.0A0A0L9VMD9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9050.0A0A0S3T905_PHAAN; Uncharacterized protein
STRINGXP_007151649.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-99LOB domain-containing protein 41
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]