PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0319s00040.1
Common NameLR48_Vigan07g164500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 162aa    MW: 17806.3 Da    PI: 7.5033
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0319s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260477.5e-151564149
            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal 49
                      +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+   +  l +++a 
  Vang0319s00040.1 15 PCGACKFLRRKCVKSCIFAPYFDSDQgTAHFAAVHKVMNLQAELTYVQAR 64
                      7***********************9989*********9888777666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.01514119IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-131563IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDYGGKIGGS ERGGPCGACK FLRRKCVKSC IFAPYFDSDQ GTAHFAAVHK VMNLQAELTY  60
VQARLATMQR MPMAVAPLPH PQSSSPQTLP SSDHLASNAE MQSVPMMQYD PLQPHSASLE  120
LSSILFNQSD QQLEDRELQT LAREFVTKYL PGVRFQQSNS P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523035.11e-106PREDICTED: LOB domain-containing protein 19-like
TrEMBLA0A0L9UZ391e-108A0A0L9UZ39_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SY931e-108A0A0S3SY93_PHAAN; Uncharacterized protein
STRINGGLYMA03G02631.11e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-26LOB domain-containing protein 31
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]