PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g10340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 158aa    MW: 16851.5 Da    PI: 6.496
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g10340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70273.94.8e-234511684154
          DUF702  84 salsstklssaeskkeletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     + ++s ++ +++ ++   +++ lP++v+++avfrc rvs++  ge+e+aY ++v+i+GhvfkG+Lyd+G+++
  Vang02g10340.1  45 TPSKSFSIDTSSCQQDAGFKQsLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADA 116
                     3333334444444444443324***********************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-2153115IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016249.8E-2367113IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MNVEDEASNK HVMESEESGE FRVCQDCGNR AKRDCSYKSS TSNATPSKSF SIDTSSCQQD  60
AGFKQSLPRH VRAPAVFRCH RVSAIGSGED EIAYLATVHI SGHVFKGFLY DHGADARNDV  120
PSVSELQLGN NGSGKSNNRE CSSAIGIPTS AYPASVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-166AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546717.14e-80PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK97e-24LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0L9V2606e-86A0A0L9V260_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S8W96e-86A0A0S3S8W9_PHAAN; Uncharacterized protein
STRINGGLYMA15G37600.11e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-25Lateral root primordium (LRP) protein-related