PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g05280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 746aa    MW: 83665.3 Da    PI: 5.2084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g05280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05201224123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC +C++ F +++n++rHir+ H
  Vang02g05280.1 201 HKCDKCSREFCSPMNYRRHIRVdH 224
                     79*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MVVGGLDGER RPWLCGKVTF DGERPASFTS KRVSLLQREE GEGELSVVTL NFLSNNFLAD  60
LLPAKTHCIP SAPLHRSSRL SSVSELSLPP HFRQFPLAKL KASSSADVMN TEEKDTIGGE  120
SSLHFPTPDG NSDHLLHLLY ALDSQGVNNS FSSLSVHIFG GSFSRAFRNL SKRKLYWISL  180
LTHLTSFPGW PLLSPLNVQL HKCDKCSREF CSPMNYRRHI RVDHRKKNLD KEFTKNRDLL  240
EAYWDKLSAE EAKEVISLEN VVLEEVPGSS ILKSLKTLVL NQRFYSFPAH YLMAGTVLLD  300
ILQAKSSSFP ISSQVLFNIL DEASEKTFLC GTAESVQRYV FVGDAGNNGL ELRNIIAFTS  360
FLLEQKLVKA WLTAKEAEAL RCQKQLVEEE EAAQKRQAEI LERKRQKKLR QKEQKAREQR  420
HKAEAEINGY IESAVKALSL SEASLETHNF EAHNPNAFSD NVASPVPPQY IDTNKEINED  480
TRSEYDTIAD QNLERWSEAE DLHTDQISPL PNFEVNQKHE AHNPNAFSDN VASPNLERWS  540
EADDLHTDQI SPLPNLEVNQ KHEANNDNKA SAIGRGSEVW SPKSEEEIDK VVLKTTQEKK  600
PDQLKNQLLI GSISINIDNC KQSEGNMVTS QKDSMVENVG KENSSWDKPM NTDPVSQHET  660
EDQVPVQSDE TEVSMGSTER TADIRRFQSF IQEAKAFLAR RWEEALASDH VVLHISSDSE  720
SSSSEETQDS IADTKLPATS GANPD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401408ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g05280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438841.10.0PREDICTED: uncharacterized protein LOC108344844 isoform X1
TrEMBLA0A0L9VJ840.0A0A0L9VJ84_PHAAN; Uncharacterized protein
STRINGXP_007152241.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.13e-84C2H2-like zinc finger protein