PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g04570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 165aa    MW: 18596.5 Da    PI: 11
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g04570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.33.6e-0572972954
                    HHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox 29 ereeLAkklgLterqVkvWFqNrRak 54
                    ++++L +++gL+ +q+ +WF N+R +
  Vang02g04570.1 72 DKAKLVEETGLQLKQINNWFINQRKR 97
                    678999******************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.07E-570102No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1370105IPR009057Homeodomain-like
PROSITE profilePS500718.84370101IPR001356Homeobox domain
PfamPF059201.5E-107097IPR008422Homeobox KN domain
SuperFamilySSF466891.07E-771107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
RRRSDLANWK PHHRQTIVAF YLTGIAVSSL PFFLRFSDLV RGVLLLLLHS SKSGSLGGGS  60
NQALSHLHLE DDKAKLVEET GLQLKQINNW FINQRKRNWH NNLERAYLLA ITEVLESFPL  120
TFSIAKGIPV PSQVLVEAKR IAESRIPPKI TYKNTSGSSK EKKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g04570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-110AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.13e-18KNOTTED-like homeobox of Arabidopsis thaliana 7