PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0291s00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 245aa    MW: 26629.5 Da    PI: 6.3156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0291s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081160182123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+++F +   L  H rtH
  Vang0291s00090.1 160 HECPVCSRVFGSGQALGGHKRTH 182
                       79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-6116133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-5156183No hitNo description
PROSITE profilePS501579.66160182IPR007087Zinc finger, C2H2
PfamPF139121.4E-12160182IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMNLPVPPKE SEFVPVQLSF EAESSPSQSS SSFYGLRENP KKSFRFADPE FSFAAETGSV  60
ILQDRESETE SSKNPTRKRS KRAWQLGEPV KKMKLCGNNN KNESASSASD TTAEEAVFRS  120
YQALGGHRAS HKKMKLNSET EFQKPEPEPE HVAVSEKKIH ECPVCSRVFG SGQALGGHKR  180
THVIGSSATH TTATVRTSAT VSVGASVRVG DSLIDLNLPA PVDDDEDISQ FDHSALSDAE  240
FVKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0291s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441668.11e-113PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0L9VRM31e-111A0A0L9VRM3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SXG41e-111A0A0S3SXG4_PHAAN; Uncharacterized protein
STRINGXP_007134733.17e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-30C2H2-like zinc finger protein