PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00320.1
Common NameLR48_Vigan03g262300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 262aa    MW: 28705.8 Da    PI: 6.0669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059108130123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C++ F ++  L  H++ H
  Vang0268s00320.1 108 FSCNYCNRKFLSSQALGGHQNAH 130
                       89**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-6106135No hitNo description
PROSITE profilePS5015711.635108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKQDFDLEVV ASAEYESEVS SQVASNISIQ ETCAGPCSDN LVNSPHVTKP IEFHLHSDAI  60
SLDLTLNFNN NDLVVTDSTG LSFSSTTSES NNDPPSQSTP SQTMPRVFSC NYCNRKFLSS  120
QALGGHQNAH KRERTLAKRA LRMGFFSERY VSLASLPLHG SFRSLGIKAH SSLHQGFSPT  180
MRPPEMKSSA RFEQGYVGFP IFLEEDEAEL LWQGSYHQVP SNGGHTHQNF TLSGTSNLSF  240
NGVNHPPVDI ENSAPELTLK L*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416311.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_017416312.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_017416313.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_017416314.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_017416316.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_017416317.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392638e-43ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A0L9U9470.0A0A0L9U947_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZX70.0A0A0S3RZX7_PHAAN; Uncharacterized protein
STRINGXP_007163363.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-44zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]