PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00300.1
Common NameLR48_Vigan03g262800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 483aa    MW: 51872.1 Da    PI: 7.8408
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.28.8e-24300347255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e      ilelm+vk+Ltl+hvkSHLQ+YR+
  Vang0268s00300.1 300 PRMRWTSTLHARFVHAVELLGGHE------ILELMDVKDLTLAHVKSHLQMYRT 347
                       9*********************98......***********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-12297347IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-22298347IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18300347IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MPLEGIFIEP TSTSTPDLSL HISPPSTSSS SSLICNNGTS AGATNYEARN STGTNFPSQA  60
HTELSLGRNF SGGGRGGIEE PPPHNTNSSI NPYYQTQQPR FHHLHHHSNT GNVSKAATAT  120
STTSSSNHLS HINYGVSLLD VSSEGLRPIK GIPVYHNRSF PFLPMEHSGD KDHHAKMCLY  180
HHMPTYPSLS SSCSPLCSSS SSFTSSPAPY FAAAAGAPDP MSYLSSGGST VAAAAAYRAA  240
TATRFNGISG EAFKTHHPLH HHHSSSHYGV GLGGSHEASS GLMRSRFLPK LPTKRSMRAP  300
RMRWTSTLHA RFVHAVELLG GHEILELMDV KDLTLAHVKS HLQMYRTVKT TDKPAASSGL  360
SDGSGEDDMS PMGSSGGMRQ FSDQRSLSDR PVQQDMDYSS ANTLWSNSSS NREPWQQNSS  420
NDINGFRPPI FQSQQISGGH QIQDCDSTQL KNSLSGSANL ECKNPSLEFT LGRPDWNGKG  480
QA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419208.10.0PREDICTED: transcription repressor KAN1-like
TrEMBLA0A0L9U9540.0A0A0L9U954_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZT30.0A0A0S3RZT3_PHAAN; Uncharacterized protein
STRINGXP_007163357.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.13e-51G2-like family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]