PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0263s00150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 411aa    MW: 43990.6 Da    PI: 10.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0263s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-055577123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C++C+k F r  nL+ H r H
  Vang0263s00150.1 55 FICEICNKGFQRDQNLQLHRRGH 77
                      89*******************88 PP

2zf-C2H214.30.00012131153123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Vang0263s00150.1 131 WKCEKCSKKYAVQSDWKAHTKTC 153
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-75477No hitNo description
PfamPF121714.7E-55577IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0225577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8455577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035511096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7126151No hitNo description
SMARTSM00355130131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MHKFSSLALF GIGRCIKGPP RSNLWVPHRL SDRDRDPDAE VIALSPKTLM ATNRFICEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE QSCVHHDPSR ALGDLTGIKK  120
HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSSNV NGNNNGTDVG  180
PNYMSSCSSS GLPDIVQMAQ ANGLMGSTSM VSNFGVPAGS NSTSANLSLS SLPIGKRGEA  240
GGTVVDLASI YNSEGPNKNS KPASPMSATA LLQKAAQMGS TRSTNPSIFS GSFGVMNSPS  300
SQTTSLNNNN NGAAAMMLGS NATPATDFTS MTHSPNGFDQ LVMQTNAQLQ SEPVKLKLRS  360
SAVEHNLTRD FLGVSGGGGG GGGPQFLPQE LAKFASMGSP MGLSHFTGNQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-22127167343Zinc finger protein JACKDAW
5b3h_F3e-22127167343Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18193KLRQRSNKEVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0263s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604570.11e-148zinc finger protein JACKDAW isoform X2
RefseqXP_028217224.11e-148zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A151RGE10.0A0A151RGE1_CAJCA; Zinc finger protein JACKDAW
STRINGVIT_08s0040g02100.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-80indeterminate(ID)-domain 2