PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0260s00220.1
Common NameLR48_Vigan07g190500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 234aa    MW: 26290 Da    PI: 9.9434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0260s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001688107120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r+ nL+ H+
  Vang0260s00220.1  88 FSCPVCCKTFNRHNNLQMHM 107
                       89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-583110No hitNo description
Gene3DG3DSA:3.30.160.601.0E-588107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.28488115IPR007087Zinc finger, C2H2
PfamPF128743.4E-488107No hitNo description
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNQNQLQPLP LLSSFLGSSP EEALLQNQNA KPHHGQVEDV TVALHIGLPN NSSGGSTNDH  60
GFVNATTHAP GNYWIPTQEQ ILVGFSHFSC PVCCKTFNRH NNLQMHMWGH GSQYRRGPDS  120
LKRTHPRPLL DIPCYCCARG CKNNIEHPRA KPLKDFRTLQ THFKRKHGSK PFTCRKCAKP  180
LAVKGDWRTH EKNCGKRWLC ICGSDFKHKR SLKDHMKAFG FGHTPFTSSS DAM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0260s00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428788.11e-176PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG36e-96TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A0L9UZR91e-174A0A0L9UZR9_PHAAN; Uncharacterized protein
STRINGXP_007141186.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.13e-96C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]