PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0255s00010.1
Common NameLR48_Vigan11g123900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 298aa    MW: 33115.8 Da    PI: 7.3398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0255s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215375123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Vang0255s00010.1 53 YSCSFCRREFRSAQALGGHMNVH 75
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-65079No hitNo description
PROSITE profilePS5015711.2195380IPR007087Zinc finger, C2H2
SMARTSM003550.00985375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEQGQCWTKR KYSLSSSLSS PTNPSCGDSW EEQAFAEDAA NSLGGCVWPP RSYSCSFCRR  60
EFRSAQALGG HMNVHRRDRA RLKQQPSSPH NEILCHDLQT QLHMPVQSPL DDYLYPSPVC  120
GLPCKKTKPN SYHDFVASPS SPSHSKALLA PSVNSGNSRD ETVIPFYDSS VLHKISPISN  180
SSESWPCLAE DHRLYSCKFH PQADTKKSSK GDTDDIDGDM ILNSVVCSTH PSLQFESTKE  240
ADHISYKKKK TDASSSPFSP KSSSVDRHHM QTKMFEFSPS SVEELDLELR LGNRSKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124875229superman protein
2l1o_A1e-124875229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0255s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441950.10.0PREDICTED: uncharacterized protein LOC108347293
TrEMBLA0A0L9VT020.0A0A0L9VT02_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SWU80.0A0A0S3SWU8_PHAAN; Uncharacterized protein
STRINGGLYMA01G24820.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]