PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0236s00410.1
Common NameLR48_Vigan50s004500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 364aa    MW: 41747.4 Da    PI: 4.9548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0236s00410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.21.1e-23521362102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+ +ed+++++++sws+ g sfvv+d++ f++++Lp+yFkh+nf+SF       gF+k++ ++         weF+++ F +g+++ll
  Vang0236s00410.1  52 FLTKTYDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSF-------GFRKIDPDR---------WEFANEGFLRGHRHLL 128
                       9**************************************************9.......9*****999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                        +i+r+k+
  Vang0236s00410.1 129 ANIRRRKQ 136
                       ******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-2648134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-2748134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-4748134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-115275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-2152134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1190102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNYLYPVKEE YFESPPPSSS SSPTSQTGGD ESAVVSLPRP REGLHEVGPP PFLTKTYDAV  60
EDPTTSHIVS WSRGGASFVV WDPHAFSRDL LPRYFKHNNF SSFGFRKIDP DRWEFANEGF  120
LRGHRHLLAN IRRRKQPSQP STSQQGQGHC VEVGRFGLDE EVDRLKRDKH VLMMELVKLR  180
QQQQNTRSYL EEMEERLRGT EIKQQQMMSF LARALKNPTF IQQLLQQKEK RKELEEAMSK  240
KRRRPIEQGP NGVGESSIGR EGRSSVKVES QVFEEYGFGV SELEVLALEM QGYGRGKREQ  300
EEEPEALESQ ERLEKELDEG FWEELFSEGF EGELDIPTSQ DPDDEEDVNV LANRFGYLGS  360
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-175013418120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229243KRKELEEAMSKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496397.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0S3RY190.0A0A0S3RY19_PHAAN; Uncharacterized protein
TrEMBLA0A0L9T3E90.0A0A0L9T3E9_PHAAN; Uncharacterized protein
STRINGGLYMA19G34210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-96heat shock transcription factor A6B
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]