PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0214s00210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SRS
Protein Properties Length: 433aa    MW: 46114.5 Da    PI: 7.0983
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0214s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022121.4e-652153753154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls..s 93 
                       sg+++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++a+a+  +  s +++a+k++r    ++++++s+t++s  +
  Vang0214s00210.1 215 SGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGS--SGSTSATKKPRLV-PSQTTTTSHTSTSnnT 304
                       7889**********************************************87777765544..5577888888876.4444444444444005 PP

            DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       ++++++++t s          lP +v+++a f+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e+
  Vang0214s00210.1 305 TTPPRSFDTGSshqdvsfkesLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVED 375
                       566778887778999******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.5E-61217374IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.2E-27219261IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.2E-28326373IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
LSIKEATFIC GYSYKEVTPI LINTASVVAT TRRFPSDSGA FVDWSATPSA VSGRGDDLSL  60
GFNASSAAAH GGASMWPVAS RSFNHNLSPH HDIFVVAPAS SFHHHHHSDA VLSDPNNNSS  120
NATALGVNVF PLLTATPCLT PESEGIMGNI NNHRNRIQLW QPQESPQHQH ADGVLAGNHR  180
SRIQLWQEHD ESPPPQQQQQ QHPNAHVQER EGSGSGASTC QDCGNQAKKD CSHRRCRTCC  240
KSRGFDCATH VKSTWVPAAR RRERQLMAAT AAVGSSGSTS ATKKPRLVPS QTTTTSHTST  300
SNNTTTPPRS FDTGSSHQDV SFKESLPCQV RAPAEFKCVR VTAVDDGDDE YAYQAVVKIG  360
GHVFKGFLYD QGVEDKSEYP NLSELHLGGG GSDGGGRNGV SSSSPMVNPS DVYAASAGVL  420
LGDSSNYGNA IN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490288.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_014490289.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A0L9VII20.0A0A0L9VII2_PHAAN; Uncharacterized protein
STRINGGLYMA07G35780.21e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-66Lateral root primordium (LRP) protein-related