PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0204s00380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 274aa    MW: 29974.5 Da    PI: 6.882
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0204s00380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.4e-3081134155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Vang0204s00380.1  81 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 134
                       59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-2078138IPR009057Homeodomain-like
PROSITE profilePS5129411.05978137IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-3180139IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-2482134IPR006447Myb domain, plants
PfamPF002499.8E-884133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MREEDSNWFS RWEEELPPPE ELMPLSQTLI TPDLAMAFDI RNPHTSTNPN TAQQPTSNDF  60
ADSGELGSGT AGEEPARTLK RPRLVWTPQL HKRFVDAVAH LGIKNAVPKT IMQLMSVDGL  120
TRENVASHLQ KYRLYLKRMQ GISAAGPDPA TDHLFASSPV PAHFLHPATR PNSDHFLPFV  180
PVPALHHHQQ QQQQLAAAAQ YHRQVSHFGS PPNGHFENPF ISRPNLQRMG GGGGGGGPVH  240
NHHPVSGYVE DMESANAASG GRKVLTLFPT GDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-3281137157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0204s00380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491386.11e-164transcription factor MYBC1
SwissprotO222104e-65MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1S3TC941e-163A0A1S3TC94_VIGRR; transcription factor MYBC1
STRINGXP_007162050.11e-158(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-93G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]