PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18800.2
Common NameLR48_Vigan07g269100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 380aa    MW: 44089.5 Da    PI: 6.7974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18800.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05142165123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++++Lk+H +  H
  Vang01g18800.2 142 YTCGVCGRKCKTHMDLKKHFKQlH 165
                     9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.4E-591132IPR029060PIN domain-like
PROSITE profilePS5015710.99142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
CDDcd061672.04E-12156297No hitNo description
Gene3DG3DSA:3.40.50.10101.4E-5228293IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNNSLFLHNA NAIHFTFHSA FSQTQRRHVA SNKHLSQRYP RIQCCCVEID MVKNSQGIYA  60
PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF VHLPQWVLHE  120
RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE KKLNRLKSLK  180
GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE DKPQAADWAL  240
KRQMVHSMSR GIDWLFLVSD DSDFSDMLRR AREADLGTVV VGDWDRALGR HADLWVPWSG  300
VENGEVELVP EMKKRREHGF LNDDDDDDHH DRGDWGGLNE DEELGQDFML LHSEDEDEDE  360
GNYYYDDEEE EEEDGLYIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429177.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108337215
TrEMBLA0A0L9V2B70.0A0A0L9V2B7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPX60.0A0A0S3RPX6_PHAAN; Uncharacterized protein
STRINGXP_007160873.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-146C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]