PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18800.1
Common NameLR48_Vigan07g269100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 320aa    MW: 36970.7 Da    PI: 6.8512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-0592115123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++++Lk+H +  H
  Vang01g18800.1  92 YTCGVCGRKCKTHMDLKKHFKQlH 115
                     9******************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.7E-61582IPR029060PIN domain-like
PROSITE profilePS5015710.9992120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061672.21E-12106247No hitNo description
Gene3DG3DSA:3.40.50.10108.7E-6178243IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVKNSQGIYA PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF  60
VHLPQWVLHE RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE  120
KKLNRLKSLK GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE  180
DKPQAADWAL KRQMVHSMSR GIDWLFLVSD DSDFSDMLRR AREADLGTVV VGDWDRALGR  240
HADLWVPWSG VENGEVELVP EMKKRREHGF LNDDDDDDHH DRGDWGGLNE DEELGQDFML  300
LHSEDEDEEE EEEDGLYIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g18800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429177.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108337215
TrEMBLA0A0L9V2B70.0A0A0L9V2B7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPX60.0A0A0S3RPX6_PHAAN; Uncharacterized protein
STRINGXP_007160873.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]