PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g17710.1
Common NameLR48_Vigan07g256600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 370aa    MW: 40770.9 Da    PI: 9.8387
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g17710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-057092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C k F r  nL+ H r H
  Vang01g17710.1 70 FVCEICQKGFQRDQNLQLHRRGH 92
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.99E-56893No hitNo description
Gene3DG3DSA:3.30.160.602.4E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0327092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6587092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSNLTSASSE ISASSGIRND NGFFHAHQYS STSINQEPQP KKKRSLPGHP DPDAEVIALT  60
PETLLATNRF VCEICQKGFQ RDQNLQLHRR GHNLPWKLKK KNSKEVRKKV YVCPEATCVH  120
HDPSRALGDL TGIKKHFFRK HGEKKWKRDS FITHRAFCDA LAQESGRAVN PHSLLSSQSQ  180
FRSHGLQLEA ASSLVMKREQ DFNLLGQEIP SWLSSPTVLE ESMHSQTLRT TLDFSTPQLF  240
PTHANHSLFH HDQNPSPTTT STTTASTPTF LPSLSSFHYS TTSPHMSATA LLQKASQIGV  300
TVSAATSQAM IVRPHLFLQQ VHVPECTTTT PTTTGYNNMA SSSPVSGMLM AIPSREQIGT  360
HGFARGLAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108KLKKKNSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g17710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428159.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_017428160.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-78IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0L9V1W40.0A0A0L9V1W4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPJ90.0A0A0S3RPJ9_PHAAN; Uncharacterized protein
STRINGXP_007161022.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-69indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]