PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g16660.1
Common NameLR48_Vigan07g278900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 334aa    MW: 35630.4 Da    PI: 8.8636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g16660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0594116223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C++Cg++F+  ++L+ H+ + H
  Vang01g16660.1  94 ACSHCGEVFPKMESLELHQAVrH 116
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.82993121IPR007087Zinc finger, C2H2
PROSITE patternPS00028093116IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-28118329No hitNo description
Gene3DG3DSA:3.90.228.101.6E-18120329IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
VHDPSKGYSK IGSSCSSICS FRDVVHGNTR VVHRSDNSSP ESSSLGQETG LLTRKPVTAS  60
TRSTAAKSNA GTTYTSSSSS RGMQLPVARS TVCACSHCGE VFPKMESLEL HQAVRHAVSE  120
LGPEDSGRNI VEIIFKSSWL KKDNPICKIE RILKVHNTQR TIQRFEECRD TVKNRALGST  180
KKNPRCAADG NELLRFHCTT LTCALGARGS SSLCASVPGC GVCTIIRHGF QGGGGEHAKG  240
KGVRTTASSG RAHDSVVCGD GTRRAMLVCR VIAGRVKRVA EDTPPSEEEH VSVASYDSVA  300
GYAGIYSNLE ELVVFNPKAI LPCFVVIYKV PSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g16660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502723.10.0uncharacterized protein LOC106763069
TrEMBLA0A1S3U9L10.0A0A1S3U9L1_VIGRR; uncharacterized protein LOC106763069
STRINGXP_007160670.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-131C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]