PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g16450.1
Common NameLR48_Vigan07g281600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 263aa    MW: 28802.5 Da    PI: 4.5915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g16450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-163988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +kGVr++  +g+WvAeIr+p   + r +r +lg++ t  eAa a++ a+++l+g
  Vang01g16450.1 39 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYETSVEAAMAYDCAARQLYG 88
                    69****999.**********8...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-283898No hitNo description
PROSITE profilePS5103221.2193996IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-203997IPR016177DNA-binding domain
SMARTSM003801.5E-3139102IPR001471AP2/ERF domain
PRINTSPR003671.3E-84051IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-294097IPR001471AP2/ERF domain
PfamPF008473.4E-124088IPR001471AP2/ERF domain
PRINTSPR003671.3E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLTSGMRMNA SKQVKKSAKA SSRKGCMRGK GGPENASCTF KGVRQRTWGK WVAEIREPNR  60
GARLWLGTYE TSVEAAMAYD CAARQLYGSD AKLNLPDLAM ALAFNFQFPP PSPQIPHMQP  120
SPQLQHSQIP SPYDIFNLPS FDFINNLTDD TNIMFNPVLS MPPQHAIADS APVYASDSHV  180
AVPYENTTIP MAIHPSNPLE INEDTVDPFG GSFNDIPDPM FDDSIWAEAA RSLDFPLIPD  240
AAGINEAETF LEVGPWDSLQ TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-174096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-174096663ATERF1
3gcc_A9e-174096663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g16450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428963.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLA0A0L9V2L60.0A0A0L9V2L6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQG10.0A0A0S3RQG1_PHAAN; Uncharacterized protein
STRINGXP_007160709.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-43ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]