PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11630.1
Common NameLR48_Vigan07g217000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 236aa    MW: 25409.2 Da    PI: 4.4412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-183181155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Vang01g11630.1 31 KKFKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 81
                    59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-183191No hitNo description
Gene3DG3DSA:3.30.730.106.3E-303291IPR001471AP2/ERF domain
PfamPF008475.9E-113281IPR001471AP2/ERF domain
SMARTSM003807.4E-353295IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-193290IPR016177DNA-binding domain
PROSITE profilePS5103221.4173289IPR001471AP2/ERF domain
PRINTSPR003671.8E-83344IPR001471AP2/ERF domain
PRINTSPR003671.8E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKPEKKINT ESSKALSVSS SSAAASSENK KKFKGVRMRS WGSWVSEIRA PNQKTRIWLG  60
SYSTAEAAAR AYDAALLCLK GSSANLNFPS SSSSHYIPQD TVMSPKSIQR VAAAAANNFL  120
DTAIATTPSS PPLASTTSSS SLVSSPSISS SPSDQIDDDV SLLSPFGAYT PPPPSVNCDQ  180
ANESMAMMEY WYDLEELQSP KYVEQMLSGA FFDIDSTQLF DDLYEESDIS LWSFC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g11630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429896.11e-170PREDICTED: ethylene-responsive transcription factor ERF014
TrEMBLA0A0L9V0K81e-168A0A0L9V0K8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RN931e-168A0A0S3RN93_PHAAN; Uncharacterized protein
STRINGXP_007141071.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-31ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]