PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10050.1
Common NameLR48_Vigan07g151400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 306aa    MW: 33834.1 Da    PI: 8.0264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20135184255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Vang01g10050.1 135 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 184
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-34134194No hitNo description
SMARTSM003803.1E-37135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32135193IPR001471AP2/ERF domain
PROSITE profilePS5103223.103135192IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23135193IPR016177DNA-binding domain
PfamPF008473.4E-14136184IPR001471AP2/ERF domain
PRINTSPR003672.7E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.7E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAATMDLYNG QPQVQSDPFR GELMEVLEPF MKNSALPSTS TSTSYSYSPS PLSLPPHPNF  60
YSDPSSSYLF QTQTLIGFEQ QPGSVLGLNH LSPFQVSQIQ AQMQAQSQTS LSLNFLGPKP  120
VAMKQVGGPP KPTKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY  180
RLRGDFARLN FPNLKGSCLG EYKPLQSAVD AKLDAICQSL AEMPKQGKTE KGARASSKKS  240
KAARNPTQDP NPNLVCKAEP ERDGSVDSSP LSDLTFDVSE PQWEDASAYF NLQKFPSYEI  300
DWDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g10050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-88RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0L9UY650.0A0A0L9UY65_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RMJ80.0A0A0S3RMJ8_PHAAN; Uncharacterized protein
STRINGXP_007141161.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-62related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]