PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08600.8
Common NameLR48_Vigan07g106300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 80aa    MW: 8871.43 Da    PI: 8.7551
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08600.8genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26054.53.5e-1726133101
          DUF260  33 vhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                     vhk+FG +n++k+l+         +++slvyeA+ar+r+PvyG+vg+i++l+ q+++l+++la++++e+
  Vang01g08600.8   2 VHKVFGCKNLTKMLD---------IVKSLVYEANARVRNPVYGCVGLISNLEIQVSELQTQLAVAQAEI 61 
                     89**********995.........69**************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.684161IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-15258IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVHKVFGCKN LTKMLDIVKS LVYEANARVR NPVYGCVGLI SNLEIQVSEL QTQLAVAQAE  60
ILTMKMQQEF TFNNGRISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1726243112LOB family transfactor Ramosa2.1
5ly0_B2e-1726243112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08600.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-105AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428642.17e-49PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW38e-26LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0L9UXT42e-47A0A0L9UXT4_PHAAN; Uncharacterized protein
STRINGXP_007142160.13e-34(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-28LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]